Like you say Kurt it only seems to do it while the bike is moving so heat as something to do with it.
I have a newish disc on the bike it's the same as the one you bought and to the best of my eyesight and knowledge the disc is running true. There is always a bit of run off with a disc so it enables the disc to push the pads slightly away from the disc.
When I came to bleed the system I used a brand new unopened bottle of brake fluid so I don't think that's the problem. One thing that has come to mind when I did the bleeding of the system, the weather that day was very hot and humid so unless it's picked moisture up from the atmosphere I'm not sure??
So now we are on to thinking it's got air trapped somewhere in the system.
When I came to bleed the system before I do anything I always take out the old fluid in the reservoir with a small shringe so that I'm not pumping old fluid through the brake lines, I know there's old fluid in the lines already but that can't be helped. When I bled the system I went through half a bottle (400ml) of brake fluid so I know it's got good clean fluid in there and there wasn't a trace of any air coming through the tubes.
After cleaning everything up I raised the rear caliper up higher than the reservoir and MC and chocked the brake lever down with a block of wood so the fluid was under pressure all night long, so if there was any air in the lines it would/should float up to the the highest point being the nipples and banjo bolts. The next day I cracked open the banjo bolt and all I got was brake fluid and no air, when I came to crack open both of the nipples a very small puff of air came out of them both.
My plan today is seeing has it's far too hot to put my 30 year romper suit on. I'm going to bleed the system through again with another brand new bottle and while I'm at it, to finish the bottle off I'll do the clutch line also.
Hang about lads because there could be a post coming up saying I have a clutch problem now.

Bit of advice. Buy a good bed and a good pair of shoes, because if you aren't in one you'll be in the other.